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Pulse Crop Database Resources
,Genomic, Genetic and Breeding Resources for Pulse Crop Improvement. Crops supported include Adzuki bean, Bambara bean, Chickpea, Common bean, Cowpea, Faba bean, Lentil, Lupin, Pea, Pigeon pea, Vetch, and others. The Pulse Crop Database (PCD), formerly the Cool Season Food Legume Database (CSFL), is being developed by the Main Bioinformatics Laboratory at Washington State University in collaboration with the USDA-ARS Grain Legume Genetics and Physiology Research Unit, the USDA-ARS Plant Germplasm Introduction and Testing Unit, the USA Dry Pea and Lentil Council, Northern Pulse Growers and allied scientists in the US and across the world, to serve as a resource for Genomics-Assisted Breeding (GAB). GAB offers tools to identify genes related to traits of interest among other methods to optimize plant breeding efficiency and research, by providing relevant genomic, genetic and breeding information and analysis. Therefore, tools such as JBrowse and MapViewer can be found in this database, as well as key resources to provide the access to the annotation of available transcriptome data, helping pulse breeders and researchers to succeed in their programs.,
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Legume Information System
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,The Legume Information System (legumeinfo.org) is the USDA-ARS genetics and genomics database for legume crops and relatives. Researchers can also submit their data directly. LIS houses data for more than a dozen species such as common bean and chickpea, peanut, and soybean, with genome sequences, genes and predicted functions, families of related genes, views of evolutionary relationships between genomic regions, genetic maps, markers, and links to germplasm resources.,,
Plant Expression Database
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,[NOTE: PLEXdb is no longer available online. Oct 2019.],PLEXdb (Plant Expression Database) is a unified gene expression resource for plants and plant pathogens. PLEXdb is a genotype to phenotype, hypothesis building information warehouse, leveraging highly parallel expression data with seamless portals to related genetic, physical, and pathway data.,PLEXdb (http://www.plexdb.org), in partnership with community databases, supports comparisons of gene expression across multiple plant and pathogen species, promoting individuals and/or consortia to upload genome-scale data sets to contrast them to previously archived data. These analyses facilitate the interpretation of structure, function and regulation of genes in economically important plants. A list of Gene Atlas experiments highlights data sets that give responses across different developmental stages, conditions and tissues. Tools at PLEXdb allow users to perform complex analyses quickly and easily. The Model Genome Interrogator (MGI) tool supports mapping gene lists onto corresponding genes from model plant organisms, including rice and Arabidopsis. MGI predicts homologies, displays gene structures and supporting information for annotated genes and full-length cDNAs. The gene list-processing wizard guides users through PLEXdb functions for creating, analyzing, annotating and managing gene lists. Users can upload their own lists or create them from the output of PLEXdb tools, and then apply diverse higher level analyses, such as ANOVA and clustering. PLEXdb also provides methods for users to track how gene expression changes across many different experiments using the Gene OscilloScope. This tool can identify interesting expression patterns, such as up-regulation under diverse conditions or checking any gene’s suitability as a steady-state control.,
SoyBase and the Soybean Breeder's Toolbox
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,SoyBase is a repository for genetics, genomics and related data resources for soybean. It contains current genetic, physical and genomic sequence maps integrated with qualitative and quantitative traits.,SoyBase database was established in the 1990s as the USDA Soybean Genetics Database. Originally, it contained only genetic information about soybeans such as genetic maps and information about the Mendelian genetics of soybean. In time SoyBase was expanded to include molecular data regarding soybean genes and sequences as they became available. In 2010, the soybean genome sequence was published and it and supporting gene sequences have been integrated into the SoyBase sequence browser. SoyBase genetic maps were used in the assembly of both the Williams 82 2010 assembly (Wm82.a1.v1) and the newest genome assembly (Wm82.a2.v1).,SoyBase also incorporates information about mutant and other soybean genetic stocks and serves as a contact point for ordering strains from those populations. As association analyses continue due to various re-sequencing efforts SoyBase will also incorporate those data into the soybean genome browser as they become available. Gene expression patterns are also available at SoyBase through the SoyBase expression pages and the Soybean Gene Atlas. Other expression/transcriptome/methylomic data sets also have been and continue to be incorporated into the SoyBase genome browser.,Project No:3625-21000-062-00D Accession No: 0425040,
새팜 연천콩 데이터 2024년 8월
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본 데이터셋은 2025년 연천 지역 콩 재배 필지를 대상으로, 위성 기반 정밀 농업 분석 기술을 활용하여 월별로 생산된 공간·시계열 작황 분석 데이터입니다. 각 데이터는 필지 단위 식별 정보, 다중 스펙트럼 영상 기반 작황 지표,그리고 필지 내 작황 구역별 평균값(정량 지표)을 포함하여 생육 모니터링, 영양 상태 분석, 수량 예측에 활용할 수 있도록 구성되어 있습니다.
Germplasm Resources Information Network (GRIN)
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,The Germplasm Resources Information Network (GRIN) is an online portal for information about agricultural genetic resources that are managed by the Agricultural Research Service of USDA, along with U.S. partnering organizations.,The content includes general information about ARS animal, microbial and plant germplasm collections, most notably the U.S. National Plant Germplasm System (NPGS). The NPGS curates more than 600,000 active accessions of living plant material at 20 genebank locations around the U.S., and makes small quantities available globally to plant breeders and other professional scientists.,GRIN also documents activities of Crop Germplasm Committees (CGC) that support the NPGS. The CGCs are comprised of public and private sector subject matter experts for a given crop (there are currently 44 CGCs) who voluntarily provide input on technical and operational matters to the NPGS.,The site includes two searchable datasets: the ARS Rhizobium collection and Plant Variety Protection Certificates. The Rhizobium collection is living bacteria that nodulate the roots of leguminous plants symbiotically to provide nitrogen fixation. Samples are available to research scientists globally upon request. The Plant Variety Protection (PVP) Certificates are issued by the Agricultural Marketing Service (AMS) of USDA to provide intellectual property protection to registered new varieties of plants that are propagated by seed or tubers. The GRIN site allows queries of PVPs by certificate number, name of the crop, variety name, or certificate holder, all using data provided by the AMS.,
새팜 연천콩 데이터 2024년 9월
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본 데이터셋은 2025년 연천 지역 콩 재배 필지를 대상으로, 위성 기반 정밀 농업 분석 기술을 활용하여 월별로 생산된 공간·시계열 작황 분석 데이터입니다. 각 데이터는 필지 단위 식별 정보, 다중 스펙트럼 영상 기반 작황 지표,그리고 필지 내 작황 구역별 평균값(정량 지표)을 포함하여 생육 모니터링, 영양 상태 분석, 수량 예측에 활용할 수 있도록 구성되어 있습니다.
BMC Genomics P. pachyrhizi Supplemental Data
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,Data about Phakopsora pachyrhizi, causative agent of soybean rust. Genomics and Bioinformatics Research Unit, Stoneville, MS.,
인포보스 - 자생종 식물 유전자 데이터
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● 데이터 키워드 - 유전체, 유전자, NGS, DNA ● 데이터 상품 요약 - 국내 식물 자생종과 동일한 종의 유전체 해독 원 데이터로부터 분석하여 얻어진 예측된 유전자 정보 ● 데이터 상품 정보 - 본 상품은 자생종 유전체 분석을 통해 얻어진 유전자의 유전자군 정보를 제공합니다. - 기능 도메인에 대해 기능별 유용성, 효소, 단백질, 병 저항성 유전자군 분류 가공 - 데이터 comparative analysis를 통해 유전자군별 발현 확률 및 계통 확률 계산 ● 컬럼 정보 - fasta format ● 활용 예제 - 본 데이터 상품을 활용하여 사용자는 다음과 같은 정보를 확인할 수 있습니다. 1) 신약 및 기능성 식품, 화장품 개발 관련 분야 기초자료 ● 데이터 상품 정보 - 2019년 7월 ~ 2019년 12월 [원본 데이터](https://www.bigdata-forest.kr/product/GNM100701)는 로그인 후 구매하여 다운로드 하십시오.
새팜 연천콩 데이터 2024년 7월
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본 데이터셋은 2025년 연천 지역 콩 재배 필지를 대상으로, 위성 기반 정밀 농업 분석 기술을 활용하여 월별로 생산된 공간·시계열 작황 분석 데이터입니다. 각 데이터는 필지 단위 식별 정보, 다중 스펙트럼 영상 기반 작황 지표,그리고 필지 내 작황 구역별 평균값(정량 지표)을 포함하여 생육 모니터링, 영양 상태 분석, 수량 예측에 활용할 수 있도록 구성되어 있습니다.