Various Cmap analyses within and across species and microarray platforms conducted and summarized to generate the tables in the publication. This dataset is associated with the following publication: Wang , R., A. Biales , N. Garcia-Reyero, E. Perkins, D. Villeneuve, G. Ankley, and D. Bencic. Fish Connectivity Mapping: Linking Chemical Stressors by Their MOA-Driven Transcriptomic Profiles. BMC Genomics. BioMed Central Ltd, London, UK, 17(84): 1-20, (2016).

The maximum connectivity scores of pairwise chemical conditions summarized from Cmap results in a file with Cytoscape format (http://www.cytoscape.org/). The figures in the publication were generated from this file. The Cytoscape file is formed from importing the eight text file therein. This dataset is associated with the following publication: Wang , R., A. Biales , N. Garcia-Reyero, E. Perkins, D. Villeneuve, G. Ankley, and D. Bencic. Fish Connectivity Mapping: Linking Chemical Stressors by Their MOA-Driven Transcriptomic Profiles. BMC Genomics. BioMed Central Ltd, London, UK, 17(84): 1-20, (2016).

The maximum connectivity scores of pairwise chemical conditions summarized from Cmap results in a file with Cytoscape format (http://www.cytoscape.org/). The figures in the publication were generated from this file. The Cytoscape file is formed from importing the eight text file therein. This dataset is associated with the following publication: Wang , R., A. Biales , N. Garcia-Reyero, E. Perkins, D. Villeneuve, G. Ankley, and D. Bencic. Fish Connectivity Mapping: Linking Chemical Stressors by Their MOA-Driven Transcriptomic Profiles. BMC Genomics. BioMed Central Ltd, London, UK, 17(84): 1-20, (2016).

RLWrankedLists.tar.gz:These lists linked to various chemical treatment conditions serve as the target collection of Cmap. Probes of the entire microarray are sorted based on their log fold changes over control conditions. RLWsignatures2015.tar.gz: These signatures linked to various chemical treatment conditions serve as queries in Cmap. This dataset is not publicly accessible because: too big in size. It can be accessed through the following means: located in the High Performance Computing archive /asm/FISHTOX/TAR_BALLs/fishCmap.tar.gz. Format: Fish connectivity mapping involves working with a large amount of data. Of primary interest to other researchers and general public are probably the rank-ordered gene lists and gene signatures. The former acts as a database-like target while the latter as queries. Along with fish Cmap outputs, they are contained in the file fishCmap.tar.gz as RLWrankedLists.tar.gz and RLWsignatures2015.tar.gz. This dataset is associated with the following publication: Wang , R., A. Biales , N. Garcia-Reyero, E. Perkins, D. Villeneuve, G. Ankley, and D. Bencic. Fish Connectivity Mapping: Linking Chemical Stressors by Their MOA-Driven Transcriptomic Profiles. BMC Genomics. BioMed Central Ltd, London, UK, 17(84): 1-20, (2016).

RLWrankedLists.tar.gz:These lists linked to various chemical treatment conditions serve as the target collection of Cmap. Probes of the entire microarray are sorted based on their log fold changes over control conditions. RLWsignatures2015.tar.gz: These signatures linked to various chemical treatment conditions serve as queries in Cmap. This dataset is not publicly accessible because: too big in size. It can be accessed through the following means: located in the High Performance Computing archive /asm/FISHTOX/TAR_BALLs/fishCmap.tar.gz. Format: Fish connectivity mapping involves working with a large amount of data. Of primary interest to other researchers and general public are probably the rank-ordered gene lists and gene signatures. The former acts as a database-like target while the latter as queries. Along with fish Cmap outputs, they are contained in the file fishCmap.tar.gz as RLWrankedLists.tar.gz and RLWsignatures2015.tar.gz. This dataset is associated with the following publication: Wang , R., A. Biales , N. Garcia-Reyero, E. Perkins, D. Villeneuve, G. Ankley, and D. Bencic. Fish Connectivity Mapping: Linking Chemical Stressors by Their MOA-Driven Transcriptomic Profiles. BMC Genomics. BioMed Central Ltd, London, UK, 17(84): 1-20, (2016).

The dataset description is within each data spreadsheet included in this record (first tab of each). This dataset is associated with the following publication: Lambert, F., D. Vivian, S. Raimondo, C. Stevens, and M. Barron. Relationships between aquatic toxicity, chemical hydrophobicity, and mode of action: log Kow revisited. ARCHIVES OF ENVIRONMENTAL CONTAMINATION AND TOXICOLOGY. Springer, New York, NY, USA, 83(4): 326-338, (2022).

Aquatic toxicity of chemical herding agents to multiple species. This dataset is associated with the following publication: Alloy, M., D. Sundaravadivelu, B. Moso, P. Meyer, and M. Barron. Comparative Toxicity of Oil Spill Herding Agents to Aquatic Species. ENVIRONMENTAL TOXICOLOGY AND CHEMISTRY. Society of Environmental Toxicology and Chemistry, Pensacola, FL, USA, 41(5): 1311-1318, (2022).

This dataset contains toxicity endpoint and mode-of-action information used in an analysis of comparative toxicity and surrogate data approaches to ecological risk assessment of amphibians. Citation information for this dataset can be found in the EDG's Metadata Reference Information section and Data.gov's References section.

This dataset contains toxicity endpoint and mode-of-action information used in an analysis of comparative toxicity and surrogate data approaches to ecological risk assessment of amphibians. Citation information for this dataset can be found in the EDG's Metadata Reference Information section and Data.gov's References section.