Data from: Gene expression during the early stages of host perception and attachment in adult female Rhipicephalus microplus ticks
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,This study produced a comprehensive transcriptome from newly molted adult ticks and will provide a useful resource for studies of tick feeding and host perception and also assist genome annotation refinements.,The goal was to develop a comprehensive transcriptome of adult female Rhipicephalus microplus ticks and discover transcriptome changes that are related to feeding and host-perception prior to feeding. We have sequenced the transcriptomes of unfed newly molted adult female ticks, newly molted adult females that were feeding upon a bovine host for 3 hours following attachment to the host, and newly molted adult females that were placed in a gas-permeable bag attached to a bovine host for 3 hours (attachment to host prevented but host odors available to the ticks). There were 2 biological replicates and transcriptomes assembled from each individual experimental condition. A collective adult female transcriptome was assembled from sequence data pooled from all 3 conditions (using data from all replicates). Differential gene expression was examined using all possible comparisons to detect putative feeding-associated and host perception-associated transcripts.,,
Genome sequence, PCR clone sequences and qPCR data. This dataset is associated with the following publication: Linz, D., K. McIntosh, I. Struewing, S. Klemm, B. McMinn, R. Haugland, E. Villegas, and J. Lu. Genomic Characterization and Wetland Occurrence of a Novel Campylobacter Isolate from Canada Geese. Microorganisms. MDPI, Basel, SWITZERLAND, 11(3): 648, (2023).
Genome sequence, PCR clone sequences and qPCR data. This dataset is associated with the following publication: Linz, D., K. McIntosh, I. Struewing, S. Klemm, B. McMinn, R. Haugland, E. Villegas, and J. Lu. Genomic Characterization and Wetland Occurrence of a Novel Campylobacter Isolate from Canada Geese. Microorganisms. MDPI, Basel, SWITZERLAND, 11(3): 648, (2023).
Nucleotide sequences from the genomes of diverse cowpea accessions for discovery of genetic variation as part of the Feed the Future Innovation Lab for Climate Resilient Cowpea
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Nucleotide sequences were generated from 37 cowpea (Vigna unguiculata L. Walp.) accessions relevant to Africa, China and the USA to discover at type of genetic variation called single nucleotide polymorphism (SNP). These accessions were chosen to represent the geographic, phenotypic and genetic diversity of cultivated cowpea. Approximately 1 million SNPs were identified, from which a research tool was developed for genetic fingerprinting using 51,128 of these SNPs. This tool is call the Cowpea iSelect Consortium Array and is available from the US company Illumina (Illumina Inc., San Diego, CA, USA; http://www.illumina.com/areas-of-interest/agrigenomics/consortia.html)
Microsatellite genotypes and metadata for white-tailed deer samples from the Mid-Atlantic region of USA
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Dataset containing information for white-tailed deer samples from Ohio, Pennsylvania, Maryland, Virginia and New York, genotyped for 11 microsatellites markers. Marker OvirQ should not be used as it presents alleles inconsistent with reported pattern, with some alleles separated by only 1 base pair and inconsistent between runs. Projected coordinates representing sampling location are in a user-defined CRS, similar to USA Contiguous Albers Equal Area Conic: "+proj=aea +lat_1=29.3 +lat_2=45.3 +lat_0=23 +lon_0=-96 +x_0=0 +y_0=0 +ellps=GRS80 +towgs84=0,0,0,0,0,0,0 +units=m +no_defs".
Microsatellite genotypes and metadata for white-tailed deer samples from the Mid-Atlantic region of USA
공공데이터포털
Dataset containing information for white-tailed deer samples from Ohio, Pennsylvania, Maryland, Virginia and New York, genotyped for 11 microsatellites markers. Marker OvirQ should not be used as it presents alleles inconsistent with reported pattern, with some alleles separated by only 1 base pair and inconsistent between runs. Projected coordinates representing sampling location are in a user-defined CRS, similar to USA Contiguous Albers Equal Area Conic: "+proj=aea +lat_1=29.3 +lat_2=45.3 +lat_0=23 +lon_0=-96 +x_0=0 +y_0=0 +ellps=GRS80 +towgs84=0,0,0,0,0,0,0 +units=m +no_defs".