These data represent the first reference genome for the invasive Phragmites australis ssp. australis (1.14 giga base pairs (Gbp)), as well as output from comparative genomic and transcriptomic analyses for invasive and native genotypes coexisting in the Great Lakes region of North America. Genome sequencing data used tillers and associated rhizome tissues collected from a single P. australis patch at the Ottawa National Wildlife Refuge near Toledo, Ohio, USA. Transcriptome analyses were produced from samples collected from three invasive and three native genotype P. australis patches from four sites around the Great Lakes in Michigan and Ohio, USA.

,The generic placement of the strawberry leaf blight fungus, formerly known as Phomopsis obscurans has always been subject to uncertainty. These datasets provide the phylogenetic evidence based on four DNA markers (28S rDNA/LSU, ITS, TEF1 and RPB2) that support the establishment of a monotypic new fungal genus Paraphomopsis. Datasets include the single gene sequence alignments for the LSU, ITS, TEF1 and RPB2 markers, and the complete combined phylogenetic dataset and phylogenetic tree files for each single gene and combined analysis. The updated multi-gene datasets and trees for the Diaporthales provide the evidence to distinguish the leaf blight pathogen (Paraphomopsis obscurans) from the taxa associated with leaf blotch (Gnomoniopsis fragariae) and petiole blight and root rot (Paragnomonia fragariae).,,

,Protein predictions using Augustus web for the fungi Neonectria coccinea and N. faginata, as well as protein prediction of closely related species N. ditissima, and Corinectria fuckeliana.,,

,These files represent the final annotations for two hydrangea genomes derived from BRAKER2 using total RNAs extracted from seven tissue types, including sepals, buds, flowers, nodes, internodes, leaves, and roots, and subjected to library preparation according to the manufacturer’s instructions. The publicly available Iso-seq reads on NCBI (PRJDB9979) were used for genome annotation. Files include normal gff3 format and coding sequence (CDS) files.,

,Annotation data of genome assemblies of Streptomyces spp. isolated from agricultural soil.,,

,Amplicon sequencing data (16S and ITS) was deposited to NCBI Genbank under BioProject ID PRJNA1200133 (https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1200133).,

,- Description: Contains data, processing and analysis code, initial exploratory figures, final publication figures, and final publication tables.,- Link: https://github.com/cliffbueno/Sunflower_AEM,- Note: A release of this repository has been archived on Zenodo with a stable DOI: https://zenodo.org/doi/10.5281/zenodo.12193724,

This dataset contains sample information about the origin of the Desmognathus wrighti and Plethodon jordani salamanders collected from Great Smoky Mountains National Park and sequenced, and their corresponding SNP genotype data. These data were used to examine patterns of genomic structure of these two salamander species within Great Smoky Mountains National Park. The raw sequence data are archived in the GenBank Bioproject PRJNA1062342 at: https://www.ncbi.nlm.nih.gov/bioproject/

,Included in this dataset are SNP and fasta data for the Pea Single Plant Plus Collection (PSPPC) and the PSPPC augmented with 25 P. fulvum accessions.,These 6 datasets can be roughly divided into two groups. Group 1 consists of three datasets labeled PSPPC which refer to SNP data pertaining to the USDA Pea Single Plant Plus Collection. Group 2 consists of three datasets labeled PSPPC + P. fulvum which refer to SNP data pertaining to the USDA PSPPC with 25 accessions of Pisum fulvum added. SNPs for each of these groups were called independently; therefore SNP names that are shared between the PSPPC and PSPPC + P. fulvum groups should NOT be assumed to refer to the same locus.,For analysis, SNP data is available in two widely used formats: hapmap and vcf. These formats can be successfully loaded into TASSEL v. 5.2.25 (http://www.maizegenetics.net/tassel). Explanations of fields (columns) in the VCF files are contained within commented (##) rows at the top of the file.,Descriptions of the first 11 columns in the hapmap file are as follows:,The fasta sequences containing the SNPs are also available for such downstream applications as development of primers for platform-specific markers.,For more information about this dataset, contact Clarice Coyne at Clarice.Coyne@usda.gov or coynec@wsu.edu.,,