Splign

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Compute cDNA-to-Genomic sequence alignments.

RefSeq: NCBI Reference Sequence Database

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A comprehensive, integrated, non-redundant, well-annotated set of reference sequences including genomic, transcript, and protein.

Jana Sperschneider - Melampsora lini genome assembly and RNA-seq data

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The Melampsora lini genome was sequenced to improve its genome assembly. PacBio HiFi and Hi-C data was generated as well as RNA-seq data.

Human members of the eukaryotic protein kinase family

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Publicly available genetic sequence data were searched for human sequences that potentially represent protein kinases, important players in virtually every signaling pathway. After removal of duplicates, splice variants and pseudogenes, this search yielded 510 sequences with recognizable similarity to eukaryotic protein kinases.

Genome Sequence Data Set01

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The fasta files (Genome_Set01.zip) contain the reference-assisted de novo assemblies (as contigs) of three Escherichia coli isolates. The table contains rows as isolates (yellow) and columns as attributes (green) for each individual genome. This dataset is associated with the following publication: Gomez-Alvarez, V., and J. Hoelle-Schwalbach. Draft Genome Sequences of Antibiotic-Resistant Escherichia coli Isolates from U.S. Wastewater Treatment Plants. Microbiology Resource Announcements. American Society for Microbiology, Washington, DC, USA, 8(23): e00351-19, (2019).

Gene

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Gene integrates information from a wide range of species. A record may include nomenclature, Reference Sequences (RefSeqs), maps, pathways, variations, phenotypes, and links to genome-, phenotype-, and locus-specific resources worldwide.

Genome Workbench

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An integrated application for viewing and analyzing sequence data. With Genome Workbench, you can view data in publically available sequence databases at NCBI, and mix these data with your own data.

Listeria Whole Genome Sequence Data Reference Sets: Needed to Allow for Improved Persistence Assessment and Source Tracking

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Briefly, sample collection will entail collecting soil samples at 5 sites within 1 suggested area, with each site being more than a quarter mile apart. Sample sites would be between 150 feet from roads, and 75 feet from trails. At each site, 3 subsamples of topsoil (0-8 inches) using scoop will be collected, yielding 1 pooled sample (about 1.2 lbs).

Genbank Accession Numbers for DNA Sequences Amplified from a Subset of Environmental Samplers 2016 - 2017

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These data contain Genbank Accession numbers for DNA amplified and sequenced from a subset of Environmental Samplers that were positive for Ceratocystis lukuohia and Austropuccinia by quantitative PCR (qPCR)

Genome Assembly Data

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A database providing information on the structure of assembled genomes, assembly names and other meta-data, statistical reports, and links to genomic sequence data. Genomes FTP site FAQ at https://www.ncbi.nlm.nih.gov/genome/doc/ftpfaq/