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Evaluating regulations and surveillance as risk-mitigation to the emerging amphibian pathogen Bsal- Data release
Results of a literature search performed December 1, 2020. The tables in this document summarize the publications fitting in this search criteria and are split into the publications that update the list of international species that could carry Bsal (Appendix 1 Table S1). Number of individual live amphibians imported in categories of urodelan (salamander, newt, and related taxa) species restricted under the interim regulations and not listed, species not listed on the regulations that have had Bsal detected, notably Bombina spp., anuran species in the genus Rana, and Xenopus (including African clawed frogs) as a comparison of species not thought to be susceptible to Bsal, but commonly imported (Appendix 3 Table S1). Data and relative risk scores per county used for the risk analysis of B. salamandrivorans invasion, consequences, and surveillance for U.S. salamanders. All variables were scaled from 1, lowest relative risk, to 4, highest relative risk. Import and introduction risk scores were calculated from the average live imports per year for the pre-action risk period (2010-2015) and post-action risk period (2016-2019) (Appendix S3 Table S2).
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Indiana Amphibian Pathogen Surveillance data release
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Data in this dataset were collected as a part of a surveillance project for reintroduction of a state endangered species in Indiana. This data was collected in the field by state biologists and sent to the USGS National Wildlife Health Center (NWHC) for testing of four amphibian pathogens, Batrachochytrium dendrobatidis (Bd), Batrachochytrium salamandrivorans (Bs), Ranavirus, and perkinsea. The dataset includes both the field records of the individual amphibians tested and the results for individuals for all four pathogens.
Risk assessments of animal species, plant species, and disease in the United States available online between 1990 and 2023
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Risk assessments describe the risk of a species’ invasion in a location, and many risk assessments have been produced by different institutions for various reasons. However, information is sporadically located online, increasing the difficulty of developing comprehensive lists of species with risk assessments or comparing assessment results across species in locations of interest. Therefore, we aggregated species risk assessments by searching information systems and conducting a literature review. The methods for data aggregation are explained in the larger work citation (Dean et al. 2024). The present dataset documents risk assessments available at different spatial scales (e.g., territory, state, region, nation) for over 7,000 species including (but not limited to) fishes, mammals, reptiles, amphibians, birds, mollusks, crustaceans, insects, plants, algae, and fungi. The dataset was used to help develop SIREN, a national Early Detection and Rapid Response Information System (https://www.usgs.gov/centers/fort-collins-science-center/science/siren-national-early-detection-and-rapid-response). It is important to note that most sources of risk assessments were available when collected in 2023; therefore, it is possible that the risk assessments detailed in the dataset may be removed online for one reason or another since 2023 (e.g., Grisé 2011). Additionally, some sources of risk assessments no longer exist but were described in a summary report or in an information system (e.g., Invasive Species Centre; https://www.invasivespeciescentre.ca/invasive-species/what-is-at-risk/invasive-species-risk-assessment/) in 2023; consequently, a user of the data may need to contact the original source of risk assessments to receive additional information (e.g., NatureServe). Summary reference citations: Dean, E.M., Jordon, A., Agnew, A.C., Hernandez, N.D., Morningstar, C.R., Neilson, M., Piccolomini, S.E., Reichert, B., Wray, A.K., and Daniel, W.M., 2024, America’s Most Wanted Fishes—Cataloging risk assessments to prioritize invasive species for management action: Management of Biological Invasions, v. 15, no. 1, p. 1–20, https://doi.org/10.3391/mbi.2024.15.1.01. Grisé, S., 2011, Evaluating the risk of non-native aquatic species range expansions in a changing climate in Pennsylvania: Shippensburg, Pennsylvania, Shippensburg University, Ph.D. dissertation.
Student Network for Amphibian Pathogen Surveillance Data
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Data in this dataset were collected as a part of the Student Network for Amphibian Pathogen Surveilance (SNAPs) program throughout the United States by undergraduate students in biology or ecology courses as a part of their curriculum throughout 2022. This data was collected in the field by students and sent to the USGS National Wildlife Health Center (NWHC) for testing of two amphibian fungal pathogens, Batrachochytrium dendrobatidis (Bd) and Batrachochytrium salamandrivorans (Bs). The dataset includes both the field records of the individual amphibians tested and the results for individuals for Bd and Bs.
Student Network for Amphibian Pathogen Surveillance Data
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Data in this dataset were collected as a part of the Student Network for Amphibian Pathogen Surveilance (SNAPs) program throughout the United States by undergraduate students in biology or ecology courses as a part of their curriculum throughout 2022. This data was collected in the field by students and sent to the USGS National Wildlife Health Center (NWHC) for testing of two amphibian fungal pathogens, Batrachochytrium dendrobatidis (Bd) and Batrachochytrium salamandrivorans (Bs). The dataset includes both the field records of the individual amphibians tested and the results for individuals for Bd and Bs.
Horizon Scan for Vertebrates in Trade
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This is a dataset summarizing filtering criteria and rapid risk assessments for ~25,000 species undertaken during a data-driven horizon scan of imported fish, amphibians, reptiles, birds, and mammals. The files represented in this dataset are the following: 1) 'species_filtering_metadata_table.xlsx' is the tabular summary of all intake list species names and the reason for inclusion/exclusion. 2) 'review_scores.xlsx' is the tabular summary of taxa expert risk assessment scores for species included after filtering. These data will be relayed to the U.S. Fish & Wildlife Service for further assessment and prioritization related to import regulation.
Catalog of U.S. Federal Early Detection/Rapid Response Invasive Species Databases and Tools: Version 2.0
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The dataset catalogs and describes existing online, federally supported databases and tools dealing with various aspects of a potential national Early Detection and Rapid Response (EDRR) invasive species framework. This dataset is supplementary material 2 and 3 to the manuscript, "Envisioning a national invasive species information framework" (Reaser et al., 2020) published as part of a special open source issue dealing with invasive species early detection and rapid response by the journal Biological Invasions, Volume 22, Issue 1, January 2020 (https://link.springer.com/journal/10530/22/1). A user-friendly version of this dataset is also available online as a USGS Library Guide, here: https://libraryguides.usgs.gov/edrrinvasive
Data from a national survey for the amphibian chytrid fungus Batrachochytrium salamandrivorans (ver. 2.0, Nov 2024)
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This dataset provides the results of a national survey of the United States for the salamander chytrid fungus Batrachochytrium salamandrivorans (Bsal) and the amphibian chytrid fungus Batrachochytrium dendrobatidis (Bd) conducted by the U.S. Geological Survey Amphibian Research and Monitoring Initiative from May 2014 to August 2017. Sites were sampled by capturing amphibians by hand or by traps or nets that were then swabbed individually using methods that prevent sample contamination. All swabs were then analyzed using a real-time TaqMan PCR for detection of B. salamandrivorans and Bd on the extracted DNA. The data consist of locality information and data on the individual sampled, as well as the result of the test for B. salamandrivorans and Bd. No cases of B. salamandrivorans were detected in this study.
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해수, 갯벌 등 해양환경 내 비브리오패혈증균 및 비브리오콜레라균등의 월별 모니터링 결과에 대한 데이터이며, 각 지점 별 비브리오패혈증균 및 비브리오콜레라균 검출 사항등을 제공합니다.
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해수, 갯벌 등 해양환경 내 비브리오패혈증균 및 비브리오콜레라균등의 월별 모니터링 결과에 대한 데이터이며, 각 지점 별 비브리오패혈증균 및 비브리오콜레라균 검출 사항등을 제공합니다.